PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.094340.1
Common NameCsa_4G017190, LOC101205392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 371aa    MW: 38881.8 Da    PI: 8.594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.094340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11304349655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  Cucsa.094340.1 304 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 349
                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.63298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14301362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-10302353No hitNo description
Gene3DG3DSA:4.10.280.105.9E-13303361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYQSTSSSSS SQKSMSSAHG GAPASAGGLT RYGSAPGSFL TTAVDSVIGT RQPDSAATLR  60
APPSFGAHYF SSADSSVVES SRKVVQSSST SNDLKSSSAT AAALNRSYGF NDLALGDFST  120
GRNFNSNGGQ SSSSSPLVRQ RSSPAGFLGH LSVAEPNGGF SLTMGGGGGG NGGGRLKSQM  180
SFNGQDNSLS QISEISESFV EAANSCSNGL QSNTNSTHSF APSSAFAMDS SWDTSSNSIV  240
FAAPHAKRSK HHSDADFFTG LESQFSLPQT TLEMAAVERL LQIPEDSVPC KIRAKRGCAT  300
HPRSIAERER RTRISGKLKK LQELVPNMDK QTSYSDMLDL AVQHIKGLQN QIQKLNKEVE  360
NCTCGSKECL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-177LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-177LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152076.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1029e-87BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0A0KZ440.0A0A0A0KZ44_CUCSA; Uncharacterized protein
STRINGVIT_05s0124g00240.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-68bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]