PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.094340.1

Common Name

Csa_4G017190, LOC101205392

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 371aa MW: 38881.8 Da PI: 8.594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.094340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.7e-11	304	349	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s +++L +Av++Ik Lq Cucsa.094340.1 304 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 349 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.63	298	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-14	301	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-10	302	353	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-13	303	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-12	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-8	304	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MYQSTSSSSS SQKSMSSAHG GAPASAGGLT RYGSAPGSFL TTAVDSVIGT RQPDSAATLR 60 APPSFGAHYF SSADSSVVES SRKVVQSSST SNDLKSSSAT AAALNRSYGF NDLALGDFST 120 GRNFNSNGGQ SSSSSPLVRQ RSSPAGFLGH LSVAEPNGGF SLTMGGGGGG NGGGRLKSQM 180 SFNGQDNSLS QISEISESFV EAANSCSNGL QSNTNSTHSF APSSAFAMDS SWDTSSNSIV 240 FAAPHAKRSK HHSDADFFTG LESQFSLPQT TLEMAAVERL LQIPEDSVPC KIRAKRGCAT 300 HPRSIAERER RTRISGKLKK LQELVPNMDK QTSYSDMLDL AVQHIKGLQN QIQKLNKEVE 360 NCTCGSKECL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MYQSTSSSSS SQKSMSSAHG GAPASAGGLT RYGSAPGSFL TTAVDSVIGT RQPDSAATLR  60
APPSFGAHYF SSADSSVVES SRKVVQSSST SNDLKSSSAT AAALNRSYGF NDLALGDFST  120
GRNFNSNGGQ SSSSSPLVRQ RSSPAGFLGH LSVAEPNGGF SLTMGGGGGG NGGGRLKSQM  180
SFNGQDNSLS QISEISESFV EAANSCSNGL QSNTNSTHSF APSSAFAMDS SWDTSSNSIV  240
FAAPHAKRSK HHSDADFFTG LESQFSLPQT TLEMAAVERL LQIPEDSVPC KIRAKRGCAT  300
HPRSIAERER RTRISGKLKK LQELVPNMDK QTSYSDMLDL AVQHIKGLQN QIQKLNKEVE  360
NCTCGSKECL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	1e-177	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	1e-177	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152076.1	0.0	PREDICTED: transcription factor bHLH128
Swissprot	Q8H102	9e-87	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0A0KZ44	0.0	A0A0A0KZ44_CUCSA; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-110	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	9e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.094340.1
Entrez Gene	101205392

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]